Step-by-Step Protocol for Installing Trackastra
Installation:
Go to the following link: https://github.com/weigertlab/trackastra
Create and activate a Conda environment:
conda create -n napari-trackastra -c conda-forge python=3.11
conda activate napari-trackastra
Install Napari:
pip install “napari[all]”
Install Trackastra plugin:
pip install napari-trackastra
Optional installations:
ILP support (more accurate linking):
pip install “trackastra[ilp]”
Pretrained features (SAM2-based, improved performance):
For the model variant that uses SAM2 features
pip install "trackastra[etultra]"