Plugins

MicroSAM

A tool designed for interactive segmentation and tracking in microscopy images, built on top of the Segment Anything model.

StarDist

A tool designed for cell/nuclei segmentation in microscopy images. It is a deep learning based 2D and 3D object detection method with star-convex shapes.

Publications: https://arxiv.org/abs/1908.03636 https://arxiv.org/abs/2203.02284

https://arxiv.org/abs/1806.03535

cellSAM

An open-source deep learning tool for cell segmentation in microscopy images.

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