cellSAM Installation

Step-by-Step Protocol for Installing cellSAM

Installation:

1. Visit the Installation guide: https://vanvalenlab.github.io/cellSAM/napari.html

2. Create and activate the environment:

conda create -n cellsam python=3.10 -y

conda activate cellsam

3. Install cellSAM via pip:

pip install git+https://github.com/vanvalenlab/cellSAM.git

4. Open cellSAM in Napari:

cellsam napari

5. DeepCell Access Token: 

• To use cellSAM with Napari, you will need a DeepCell access token. 

• If you don’t have a token yet, you can create one here: https://users.deepcell.org

• Generate your access token.