Resources

Our repositories

BEHAV3D: Dynamic immuno-organoid 3D imaging-transcriptomics platform to study tumor death dynamics and immune cell behavior.

BEHAV3D_Tumor_Profiler: Zero code computational framework for the comprehensive analysis of single tumor cell behaviors in live tissue and their interactions with the tumor microenvironment.

Behavioral-Guided-Transcriptomics: Analytical procedures required to integrate data from single-cell RNA sequencing of T cells with single-cell imaging data, providing for each sequenced cell probabilities of exhibiting different functional behaviors.

Below some user-friendly softwares for image segmentation and tracking and general data science resources for those starting to process (imaging) data.